Every group-based phyogenetic model has a finite group G associated to it. Parameters for the model are assigned to equivalence classes of group elements, which are orbits of some subgroup of the automorphism group of G. This function returns the equivalence classes as a list of list of group elements.
i1 : M = K2Pmodel
o1 = Model{AList => HashTable{{0, 0} => {1, 0, 0}} }
{0, 1} => {0, 1, 0}
{1, 0} => {0, 0, 1}
{1, 1} => {0, 0, 1}
Automorphisms => HashTable{{2, 3} => HashTable{{0, 0} => {0, 0}}}
{0, 1} => {0, 1}
{1, 0} => {1, 1}
{1, 1} => {1, 0}
{3, 2} => HashTable{{0, 0} => {0, 0}}
{0, 1} => {0, 1}
{1, 0} => {1, 1}
{1, 1} => {1, 0}
Buckets => {{{0, 0}}, {{0, 1}}, {{1, 0}, {1, 1}}}
Group => {{0, 0}, {0, 1}, {1, 0}, {1, 1}}
o1 : Model
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i2 : B = buckets M
o2 = {{{0, 0}}, {{0, 1}}, {{1, 0}, {1, 1}}}
o2 : List
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The object buckets is a method function.