GraphicalModelsMLE : Table of Contents

• GraphicalModelsMLE -- a package for MLE of parameters for Gaussian graphical models
• checkPD -- returns positive definite matrices from a list of symmetric matrices
• checkPD(...,ZeroTolerance=>...) -- optional input to set the largest absolute value that should be treated as zero
• checkPSD -- returns positive semidefinite matrices from a list of symmetric matrices
• checkPSD(...,ZeroTolerance=>...) -- optional input to set the largest absolute value that should be treated as zero
• ConcentrationMatrix -- optional input to output MLE for concentration matrix instead of MLE for covariance matrix
• CovarianceMatrix -- optional input to output covariance matrix
• jacobianMatrixOfRationalFunction -- Jacobian matrix of a rational function
• MLdegree -- ML-degree of a graphical model
• OptionsEigenSolver -- optional input to use options of "zeroDimSolve" in "EigenSolver"
• OptionsNAG4M2 -- optional parameter to set the parameters of solveSystem in NumericalAlgebraicGeometry
• RealPrecision -- optional input to choose the number of decimals used to round to QQ when inputing data in RR
• sampleCovarianceMatrix -- sample covariance matrix of observation vectors
• SampleData -- optional input to allow to input the sample covariance matrix instead of sample data
• Saturate -- optional input whether to saturate
• SaturateOptions -- optional input to use options "saturate"
• scoreEquations -- score equations of the log-likelihood function of a Gaussian graphical model
• scoreEquations(...,CovarianceMatrix=>...) -- output covariance matrix
• scoreEquations(...,RealPrecision=>...) -- the number of bits of precision to use in the computation
• scoreEquations(...,SampleData=>...) -- input sample covariance matrix instead of sample data
• scoreEquations(...,Saturate=>...) -- whether to saturate
• scoreEquations(...,SaturateOptions=>...) -- use options from "saturate"
• Solver -- optional input to choose numerical solver
• solverMLE -- Maximum likelihood estimate of a loopless mixed graph
• solverMLE(...,ConcentrationMatrix=>...) -- output MLE for concentration matrix instead of MLE for covariance matrix
• solverMLE(...,OptionsEigenSolver=>...) -- use options of "zeroDimSolve" in "EigenSolver"
• solverMLE(...,OptionsNAG4M2=>...) -- use options of "solveSystem" in "NumericalAlgebraicGeometry"
• solverMLE(...,RealPrecision=>...) -- the number of bits of precision to use in the computation
• solverMLE(...,SampleData=>...) -- input sample covariance matrix instead of sample data
• solverMLE(...,Saturate=>...) -- whether to saturate
• solverMLE(...,SaturateOptions=>...) -- use options from "saturate"
• solverMLE(...,Solver=>...) -- choose numerical solver
• solverMLE(...,ZeroTolerance=>...) -- optional input to set the largest absolute value that should be treated as zero
• ZeroTolerance -- optional input to set the largest absolute value that should be treated as zero