clusterModelCellDeath -- an example of a chemical reaction

Description

A cluster model for cell death, where a cluster is indexed by a tuple (L, X, Y, Z), where L represents FasL and X, Y, and Z are three posited forms of Fas, denoting closed, open and unstable, and open and stable, i.e., active and signaling, receptors, respectively [Feliu, Wiuf].

i1 : clusterModelCellDeath()

o1 = Y+Z-->2Z
     Y+Z+L-->2Z+L
     2Y-->Y+Z
     2Y-->2Z
     2Y+L-->Y+Z+L
     2Y+L-->2Z+L
     Y+2Z-->3Z
     Y+2Z+L-->3Z+L
     2Y+Z-->Y+2Z
     2Y+Z-->3Z
     2Y+Z+L-->Y+2Z+L
     2Y+Z+L-->3Z+L
     3Y-->Y+2Z
     3Y-->3Z
     3Y-->2Y+Z
     3Y+L-->Y+2Z+L
     3Y+L-->3Z+L
     3Y+L-->2Y+Z+L

o1 : ReactionNetwork

In this example n=m=3. To rename species, use substitute(ReactionNetwork,List).

Ways to use clusterModelCellDeath :

clusterModelCellDeath()

For the programmer

The object clusterModelCellDeath is a method function.