nSitePoreForming -- an example for a pore forming network

Description

This motif creates a network for an N-monomer pore network. In this motif it is assumed that monomer one dimerises and further trimerises etc. up to a formed pore. The pore has finite lifetime.

i1 : nSitePoreForming 5

o1 = 2X_1-->X_2
     X_2-->2X_1
     X_1+X_2-->X_3
     X_3-->X_1+X_2
     X_1+X_3-->X_4
     X_4-->X_1+X_3
     X_1+X_4-->X_5
     X_5-->X_1+X_4

o1 : ReactionNetwork

To rename species, use substitute(ReactionNetwork,List).

Ways to use nSitePoreForming :

nSitePoreForming(ZZ)

For the programmer

The object nSitePoreForming is a method function.